Screening of common CYP1B1 mutations in Iranian POAG patients using a microarray-based PrASE protocol

Suri, F. and Kalhor, R. and Zargar, S.J. and Nilforooshan, N. and Yazdani, S. and Nezari, H. and Paylakhi, S.H. and Narooie-Nejhad, M. and Bayat, B. and Sedaghati, T. and Ahmadian, A. and Elahi, E. (2008) Screening of common CYP1B1 mutations in Iranian POAG patients using a microarray-based PrASE protocol. Molecular Vision, 14. pp. 2349-2356.


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Purpose: The gene coding cytochrome P4501B1 (CYP1B1) has been shown to be a major cause of primary congenital glaucoma in the Iranian population. More recently it was shown to also be important in juvenile-onset open angle glaucoma (JOAG). We aimed to further investigate the role of CYP1B1 in a larger cohort of primary open angle glaucoma (POAG) patients which included late-onset patients. We also aimed to set up a microarray based protocol for mutation screening with an intent of using the protocol in a future population level screening program. Methods: Sixty three POAG patients, nine affected family members, and thirty three previously genotyped primary congenital glaucoma (PCG) patients were included in the study. Clinical examination included slit lamp biomicroscopy, IOP measurement, gonioscopic evaluation, fundus examination, and measurement of perimetry. G61E, R368H, R390H, and R469W were screened by a protocol that included multiplexed allele specific amplification in the presence of a protease (PrASE), use of sequence tagged primers, and hybridization to generic arrays on microarray slides. The entire coding sequences of CYP1B1 and myocilin (MYOC) genes were sequenced in all individuals assessed by the microarray assay to carry a mutation. Intragenic single nucleotide polymorphism (SNP) haplotpes were determined for mutated alleles. Results: Genotypes assessed by the array-based PrASE methodology were in 100 concordance with sequencing results. Seven mutation carrying POAG patients (11.1) were identified, and their distribution was quite skewed between the juvenile-onset individuals (5/21) as compared to late-onset cases (2/42). Four of the seven mutation carrying Iranian patients harbored two mutated alleles. CYP1B1 mutated alleles in Iranian PCG and POAG patients shared common haplotypes. MYOC mutations were not observed in any of the patients. Conclusions: The PrASE approach allowed reliable simultaneous genotyping of many individuals. It can be an appropriate tool for screening common mutations in large sample sizes. The results suggest that CYP1B1 is implicated in POAG among Iranians, notably in the juvenile-onset form. Contrary to POAG patients studied in other populations, many mutation harboring Iranian patients carry two mutated alleles. We propose an explanation for this observation. © 2008 Molecular Vision.

Item Type: Article
Additional Information: cited By 28
Uncontrolled Keywords: cytochrome P450 1B1; myocilin; proteinase, adolescent; adult; allele; article; clinical examination; clinical protocol; cohort analysis; congenital glaucoma; controlled study; female; gene amplification; gene frequency; gene mutation; gene sequence; genetic identification; genetic screening; genotype; gonioscopy; haplotype; health program; human; hybridization; Iran; major clinical study; male; microarray analysis; nucleotide sequence; onset age; open angle glaucoma; perimetry; preschool child; priority journal; slit lamp, Adolescent; Adult; Aged; Asian Continental Ancestry Group; Base Sequence; Child; Cytochrome P-450 Enzyme System; DNA Mutational Analysis; Female; Genetic Screening; Genotype; Glaucoma, Open-Angle; Humans; Iran; Male; Middle Aged; Molecular Sequence Data; Mutation; Oligonucleotide Array Sequence Analysis; Pedigree; Peptide Hydrolases; Phenotype
Subjects: QU Biochemistry. Cell Biology and Genetics
Depositing User: Arezoo Ghasemi siani
Date Deposited: 26 Dec 2020 04:33
Last Modified: 26 Dec 2020 04:33

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